Decoding Regulatory Structure from RNA-seq Data
Hussain, T. (2026). Decoding Regulatory structure from RNA-seq Data: A Reproducible Python Framework for Gene Regulatory Network Inference Using GENIE3. Zenodo.
DOI →Publications & Scientific Outputs
A growing collection of research publications, preprints, software papers, books, and conference abstracts by Taufia Hussain.
Research & Software Publications
Residue-Level Feature Extraction from Protein–Peptide Complexes
Hussain, T. (2026). Residue-Level Feature Extraction from Protein–Peptide Complexes for Machine Learning Applications. Zenodo.
DOI →Rare-Event Stability Tools
Hussain, T. (2026). Rare-Event Stability Tools: Python Utilities for Continuity-Corrected Logits and Odds Ratios (Anscombe, 1956). Zenodo.
DOI →PertPy Perturb-seq Demo
Hussain, T. (2025). PertPy Perturb-seq Demo: A Reproducible Python Pipeline for CRISPR Single-Cell Perturbation Analysis. Zenodo.
DOI →Books & Educational Resources
Python & AI for Modern Biological Research
Hussain, T. (2026). Python & AI for Modern Biological Research (Sample Chapter). In Python & AI for Modern Biological Research (pp. 1–32). Zenodo.
DOI →Python for Biologists: A Practical Guide to Data Analysis
Hussain, T. (2026). Python for Biologists: A Practical Guide to Data Analysis. DataLens.Tools Publishing.
DataLens.Tools →Python for Biologists: Amazon Edition
Hussain, T. (2026). Python for Biologists: A Practical Guide to Data Analysis. DataLens.Tools Publishing. Amazon Kindle Direct Publishing. ASIN: B0GYLCSJC5.
Amazon →The Biologist’s Guide to Data Analysis
Hussain, T. (2025). The Biologist’s Guide to Data Analysis: A Practical Roadmap for Cleaning, Visualizing, and Analyzing Scientific Data with Excel & Python. Independently published via Amazon Kindle Direct Publishing. ASIN: B0F74HYDND.
Amazon →Conference Papers & Abstracts
Optical Imaging of Power Muscles in Drosophila
Hussain, T., & Lehmann, F.-O. (2018). Optical imaging of power muscles in Drosophila expressing genetic indicator GCaMP6 and channel channelrhodopsin. Flying Senses Symposium, Max Planck Institute, Göttingen. Zenodo.
DOI →Significance of Calcium Signaling in Flight
Hussain, T., & Lehmann, F.-O. (2018). Significance of Calcium Signaling in Flight of Transgenic Drosophila. NeuroDoWo Conference. Zenodo.
DOI →Light-Gated Channelrhodopsin-2 Alters Calcium Signaling
Hussain, T., & Lehmann, F.-O. (2018). Light-gated channelrhodopsin-2 alters calcium signaling for power control in the indirect flight muscle of Drosophila. Meeting abstract of the German Zoological Society, Greifswald.
Calcium Signaling in Transgenic Drosophila Flight Muscle
Hussain, T., & Lehmann, F.-O. (2017). Significance of calcium signaling in flight of transgenic Drosophila expressing the laser light-triggered calcium ion channel channelrhodopsin in asynchronous flight muscle tissue. Meeting of the German Zoological Society, Bielefeld.
Collaborative Publications
Olfactory Receptor Response Prediction
Gabler, S., Soelter, J., Hussain, T., Sachse, S., & Schmuker, M. Vibrational vs. physicochemical descriptors for olfactory receptor response prediction. Molecular Informatics, 32, 855–865.
Benchmarking Odor Receptor Prediction Models
Gabler, S., Soelter, J., Hussain, T., Sachse, S., & Schmuker, M. Benchmarking physicochemical vs. vibrational descriptors in predicting odor receptor responses. Flavour, Vol. 3.